Binary Ninja MCP vs codebase-memory-mcp

A side-by-side comparison of two Developer Tools servers — tools, transport, auth, maintenance, and copy-paste config for each.

	Binary Ninja MCP Connect your LLM/MCP client to Binary Ninja for AI-assisted reverse engineering and malware analysis. Unverified stdio (local) No auth Python	codebase-memory-mcp Code intelligence engine that indexes repos into a persistent knowledge graph for AI coding agents. Unverified stdio (local) No auth C
Category	Developer Tools	Developer Tools
Language	Python	C
Transport	stdio (local)	stdio (local)
Auth	None	None
GitHub stars	392	16k
Last commit	2 months ago	12 hours ago
Verified
Actively maintained
Install	`npx -y binary-ninja-mcp`	`curl -fsSL https://raw.githubusercontent.com/DeusData/codebase-memory-mcp/main/install.sh \| bash`
Repo	Open	Open

Verdict

Pick Binary Ninja MCP if you need the broadest set of tools.

Pick codebase-memory-mcp if you prefer the more popular, battle-tested option.

Add Binary Ninja MCP

Install / run

npx -y binary-ninja-mcp

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "binary-ninja-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "binary-ninja-mcp",
        "--host",
        "localhost",
        "--port",
        "9009"
      ]
    }
  }
}

Add codebase-memory-mcp

Install / run

curl -fsSL https://raw.githubusercontent.com/DeusData/codebase-memory-mcp/main/install.sh | bash

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "codebase-memory-mcp": {
      "command": "/path/to/codebase-memory-mcp",
      "args": []
    }
  }
}

FAQ

Binary Ninja MCP or codebase-memory-mcp — which is better?

Pick Binary Ninja MCP if you need the broadest set of tools. Pick codebase-memory-mcp if you prefer the more popular, battle-tested option.

Can I use both Binary Ninja MCP and codebase-memory-mcp?

Yes — MCP clients let you enable multiple servers at once. Add both configs to your client's mcpServers and use whichever tool fits the task.

Do Binary Ninja MCP and codebase-memory-mcp work with Claude, Cursor and Windsurf?

Both do. Copy the per-client config below into Claude Desktop, Cursor, or Windsurf.

View Binary Ninja MCP →View codebase-memory-mcp →More comparisons →